Thirty non-trained panellists evaluated the samples using a 9-poi

Thirty non-trained panellists evaluated the samples using a 9-point hedonic scale (Stone & Sidel, 1993), with 1 = “disliked

extremely” and 9 = “liked extremely” for the acceptance tests. Panellists www.selleckchem.com/products/Sunitinib-Malate-(Sutent).html evaluated the samples in individual cabins, under a white light. Six samples were presented monadically. The attributes evaluated were: crust colour, crumb colour, crust appearance, crumb appearance, aroma, taste and texture. Panellists also expressed their purchase intention through a 5-point scale that varied from 1 = “would certainly not buy” to 5 = “would certainly buy”. Positive purchase intention was calculated as the percentage of panellist who attributed scores from 4 to 5. A profile of the panellists was obtained, regarding fibre-enriched bread consumption frequency. Bread quality during storage was evaluated through moisture analysis on days 1, 4 and 7 after baking. Crumb moisture was determined in triplicate through AACC Method 44-40.01 (AACC, 2010). The responses obtained for the assays carried out according to the central composite rotational design (CCRD) used to study the effects of the independent variables (WB, RS and LBG) were analysed using the Statistica 5.0 software (Statsoft PR-171 order Inc., Tulsa, USA), permitting analysis through the Response Surface Methodology, according to Rodrigues

and Iemma (2005). The responses or dependent variables were the process parameters (high-speed mixing time and proofing time) and the bread quality characteristics (specific volume, crumb instrumental colour through L*, C* and h, sensory analysis through the acceptance and purchase intention tests and moisture during storage). When mathematical models were obtained to explain these responses, they must be used with coded values for the independent variables, where: WB = coded Vasopressin Receptor value (−α to +α) of concentration of wheat bran; RS = coded value (−α to +α) of concentration of resistant starch; LBG = coded value (−α to +α) of concentration of

locust bean gum; Fcalc = calculated F; Ftab = tabled F. High-speed mixing times necessary to reach maximum gluten network development for each of the experimental design assay doughs varied between 1.32 min and 3.18 min. This variation could be due to the variation of the quantity and type of fibre present, which directly affected the amount of water added to the dough and the form this water was absorbed or left available for the development of the gluten network. The increase of viscosity can also be one of the factors involved in the modification of high-speed mixing time. A mathematical model to describe the behaviour of high-speed mixing time as a function of the quantity of the different dietary fibre sources added, within the ranges studied, was obtained (Equation (3)).

This work was supported by grants from Fundação de Amparo à Pesqu

This work was supported by grants from Fundação de Amparo à Pesquisa do Estado do Rio de Janeiro (FAPERJ), Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq), Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) and Programa de Apoio aos Núcleos de Excelência (PRONEX). “
“A wide variety of organisms have an innate immune system that provides the first line of defense against external pathogens. Vertebrates have, among the components of this innate immune system,

defensins comprising a diverse group of small cationic antimicrobial peptides. These molecules have both antimicrobial and cell signaling functions (Lai and Gallo, 2009). They are grouped into three families: alpha (α), beta (β), and theta (θ), according to the pattern of disulfide bonds between cysteine residues

(Cys). β-Defensins are a subgroup of defensins that have a characteristic β-sheet-rich fold plus six conserved Cys with particular spacing INK 128 cell line and intramolecular bonds. The structure of pre-β-defensin consists of a signal sequence, a short or absent propiece, and the mature defensin ( Ganz, 2003). β-Defensin-like peptides are found in the venom of diverse organisms, including sea anemones, snakes and platypus Rapamycin cost ( Torres and Kuchel, 2004) as well lizards ( Fry et al., 2005). Interestingly crotamine (one of four major components of the venom of the South American rattlesnake) has been shown to have a global fold and a Cys-pairing pattern similar to that of the β-defensin scaffold, although the peptides show low sequence similarity and display different biological activities ( Fadel et al., 2005). Crotamine has an antimicrobial activity against Escherichia coli and Bacillus subtilis, as well against Candida spp., Trichosporon spp. and Cryptococcus neoformans ( Oguiura et al., 2011;

Yamane et al., 2012; Yount et al., 2009). Defensin-like peptides from the platypus also show a similar overall fold and Cys-pairing pattern as β-defensin-2, although no antimicrobial activity ( Torres et al., 1999). In vertebrates, β-defensin-like genes have been described in birds (Xiao et al., 2004), fishes (Zou et al., 2007), lizards (Dalla SPTLC1 Valle et al., 2012), mammals and primates (Del Pero et al., 2002; Luenser and Ludwig, 2005; Luenser et al., 2005; Patil et al., 2005), platypus (Whittington et al., 2008) and rattlesnakes (Rádis-Baptista et al., 2003 and Rádis-Baptista et al., 2004). The β-defensin genes are organized in a different manner in each animal group. The most common structure found in mammals is two exons and one intron (Patil et al., 2005), which also includes the platypus (Whittington et al., 2008), while there are four exons and three introns in chickens (Xiao et al., 2004). In snakes, β-defensin-like genes have three exons and two introns (Rádis-Baptista et al., 2003; 2004), as well as lizards (Dalla Valle et al., 2012) and fishes (Zou et al., 2007).

Glutathione has a diversity of crucial physiological roles, but i

Glutathione has a diversity of crucial physiological roles, but it principally serves as an endogenous antioxidant. It functions as a cofactor for GPx, the major defense mechanism

against potential toxic hydrogen peroxide and other peroxides [12]. During the detoxification process of peroxides, GSSG is formed. GSH is regenerated from GSSG by the NADPH-dependent enzyme glutathione reductase (GR) [13]. Additionally, glutathione S-transferase (GST) uses GSH as a substrate to form conjugates with electrophiles, resulting in more water soluble metabolites which are more readily excreted. Glutaredoxin (Grx) utilizes the reducing power of glutathione to catalyze disulfide reductions in the presence of NADPH and GR. Grx is involved in regulation of various cellular functions, including electron transport and protein folding [14]. Because little is known about the effects of AGEs on pancreatic beta cells, we

investigated Rucaparib in vivo the effect of CML on pancreatic cell viability and determined the activity and expression of components belonging to the glutathione system. All chemicals were purchased from Sigma-Aldrich (Steinheim, Germany) unless stated otherwise. CML was obtained from SyMO-Chem BV (Eindhoven, Netherlands). Roswell Park Memorial Institute (RPMI) Selleckchem Venetoclax 1640 medium, Hank’s Balanced Salt Solution (HBSS), trypsin-EDTA (1x), non-heat inactivated fetal calf serum (FCS), and L-Glutamine were obtained from Gibco (Breda, OSBPL9 The Netherlands). The human pancreatic beta cell line 1.1E7 [15] was obtained from HPA Culture Collections. Cells were cultured in RPMI 1640 medium with 10% non-heat inactivated FCS and 2 mM L-glutamine. Cells were maintained in T75 flasks at 37 °C in a 5% CO2 atmosphere. Cells were seeded at a density of 5000 cells per well in a 96-well plate and after overnight attaching, medium was removed and cells were washed with HBSS. CML was added to the plate in different concentrations (0–1 mM). Subsequently, cells were incubated for 24 hours. After treatment, supernatant was removed and cells were washed with PBS. Next,

100 μl of MTT solution (0.5 mg/ml in culture medium) was added and cells were incubated for 1 hour at 37 °C. After incubation, the plate was washed with PBS and the formazan crystals were dissolved in 200 μl DMSO. Cells were incubated for 30 minutes after which the absorbance at 540 nm was measured spectrophotometrically using a microplate reader. Relative viability is expressed as a percentage relative to untreated cells. The production of intracellular reactive oxygen species was measured using 2,7-dichlorofluorescein diacetate (DCFH-DA) as described previously ([16] and [17]). Cells were seeded at a density of 5000 cells per well in a 96 well plate and after overnight attaching, medium was removed and cells were washed with HBSS. Cells were then incubated with 0.5 mM CML in the presence of 10 μM DCFH-DA.

While more and more information is becoming available on the path

While more and more information is becoming available on the pathogenesis of smoking-related lung cancer (US Department of Health and Human Services, 2010), a comprehensive understanding of the actual causative agents in smoke and the mechanisms involved is still missing. To some extent, this knowledge gap is related to the lack of a generally accepted laboratory animal model for mainstream smoke (MS) inhalation-inducible lung cancer. Such a model, once

established, could be used for etiological and mechanistic research, for research on diagnostic and therapeutic means, and for the evaluation of modified risk tobacco products. Such models have recently been called for by the US FDA (US Food and Drug Administration Center for Tobacco Products, 2012) and the US IOM (Institute of Medicine, 2012), in particular for comparative PD0332991 supplier assessments. The purpose of bioassays on carcinogenesis is to identify carcinogenic properties of test materials see more in laboratory rodents in order to evaluate a carcinogenic potential for humans (Organisation for Economic Co-operation and Development, 1981 and Organisation for Economic Co-operation and Development,

2009). In line with regulatory guidance for conducting bioassays on carcinogenesis, laboratory rats and mice are most commonly exposed for an appreciable portion of their lifespan. In the case of smoking, a carcinogenic potential has already been established in humans, and bioassays are required to model the human disease pathogenesis to the extent possible for the above-mentioned applications. In terms of lung cancer, laboratory rodents mainly develop peripheral pulmonary adenomas that may progress to adenocarcinomas, while humans may develop various histological types of highly invasive bronchial and bronchiolar-alveolar carcinomas (Schleef et al., 2006) with an increasing fraction of adenocarcinomas over the last decades (Devesa et al., 2005). Despite many years of research, no model for MS-induced lung tumorigenesis

could be established that is generally accepted (Coggins, 2010). However, there are three rather recent developments, which may eventually qualify. (1) Lifetime MS inhalation studies have been recently reported on F344 rats Thalidomide and B6C3F1 mice, in which statistically significant increases in lung tumors were found in females (Hutt et al., 2005 and Mauderly et al., 2004). However, the response for male rats was negative, and male mice were not tested. Furthermore, it seems that these studies have not been repeated anywhere to test for reproducibility. (2) A relatively pronounced increase in lung tumorigenicity in male and female Swiss mice was obtained when MS inhalation exposure was started immediately after birth (Balansky et al., 2007). These results seem to be reproducible in the same laboratory (Balansky et al., 2009), but apparently this study design has not been reproduced in other laboratories.

Ultrasound-sensitive thrombolytic drug

Ultrasound-sensitive thrombolytic drug selleckchem delivery combined with specific targeting is highly attractive. Targeting of clot-dissolving therapeutics can potentially decrease the frequency of complications while simultaneously increasing treatment effectiveness by concentrating the available drug at the desired site and permitting a lower systemic dose [9]. Clinical studies

support the use of ultrasound for therapy of ischemic stroke, and first trials of enhancing sonothrombolysis with microbubbles have been encouraging. A recent meta-analysis of all published clinical sonothrombolysis studies confirmed that ultrasound and tPA (with or without microbubbles) increases recanalization compared to tPA alone [10]. These observations have led to design of CLOTBUSTER, a phase III controlled clinical trial of sonothrombolysis. One emerging clinical application is sonothrombolysis of intracranial hemorrhages see more for clot evacuation using catheter-mounted transducers. As compared with MISTIE (Minimally Invasive Surgery plus T-PA for Intracerebral Hemorrhage Evacuation) and CLEAR (Clot Lysis Evaluating Accelerated Resolution

of Intraventricular Hemorrhage II) studies data, the rate of lysis during treatment for IVH and ICH was faster in patients treated with sonothrombolysis plus rt-PA versus rt-PA alone [11]. Thus, lysis and drainage of spontaneous ICH and IVH with a reduction in mass effect can be accomplished rapidly and safely through sonothrombolysis using stereotactically delivered drainage and ultrasound catheters via a bur hole. Histotripsy

is a process which fractionates soft tissue through controlled cavitation using focused, short, high-intensity ultrasound pulses. Histotripsy can be used to achieve effective thrombolysis with ultrasound energy alone at peak negative acoustic pressures >6 MPa, breaking down blood clots in about 1.5–5 min into small fragments less than find more 5 μm diameter [12]. Recent developments in using MR-guided focused ultrasound therapy through the intact skull suggest that this technology could be useful for clot lysis in humans. Experimental studies are currently being undertaken to test this possibility, both in ischemic and hemorrhagic stroke. Ultrasound and microbubbles may improve flow to the microcirculation irrespective of recanalization, thus opening new opportunities for application of sonothrombolysis in acute ischemic stroke. This was suggested by results of a study on possible adverse bioeffects [13] of 2 MHz ultrasound and microbubbles (Sonovue™) in a middle cerebral artery permanent occlusion model in rats at different steps in the cascade of tissue destruction after ischemic stroke [14]. While deleterious effects were not observed, infarctions were unexpectedly smaller in the treatment group, despite the fact that in all animals recanalization of the MCA did not occur. This suggested a beneficial effect of ultrasound and microbubbles in the microcirculation.

For example, in one study of factors related to penile bulb dose,

For example, in one study of factors related to penile bulb dose, postimplant MRI/CT fusion showed that a decrease in the distance

from the prostate apex to the penile bulb (which ranged from 5 to 33 mm in that study) correlated with increased penile bulb dose, with approximately one-third of patients receiving potentially clinically significant penile bulb doses (23). Increased dose to the Epigenetics inhibitor penile bulb has been associated with the development of postbrachytherapy erectile dysfunction in several reports [24] and [25], although this association is not conclusive [26] and [27]. Regardless, the use of MRI for treatment planning would allow improved treatment accuracy and improved Selleck Epigenetic inhibitor ability to quantify dosimetric factors associated with treatment-related morbidity. Another possible benefit of better anatomic visualization is improved control over dose heterogeneity. Accurate visualization of prostate glandular tissue and the urethra would allow improved urethral sparing and facilitate dose escalation to dominant lesions. In fact, advanced MRI techniques

such as MRI spectroscopy have been explored for dose escalation using brachytherapy [28] and [29] and external beam radiation therapy (30). Successful implementation of MRI for pretreatment planning will require the ability to use MRI guidance Teicoplanin in the operating room. The feasibility of intraoperative MRI for prostate brachytherapy has been demonstrated by the Brigham and Women’s/Dana Farber Cancer Center group (18). In that series, an open MRI was used to perform the implants with real-time intraoperative imaging, using intraoperative planning and optimization. Another study from the same group showed that prostate deformation is seen with pretreatment erMRI when compared with intraoperative MRI (31). These findings are consistent with the gland deformation seen in the present study and underscore the importance of accurate integration of

pretreatment and intraoperative MRI, which is of particular importance when using preplanning techniques. Another means of using MRI in preplanning is MRI/TRUS fusion. Fusing MRI to TRUS has been shown to be feasible and to improve visualization of the prostate, particularly with respect to identifying the base and apex slices on TRUS [32] and [33]. Those studies demonstrated that TRUS underestimated the extent of the prostate at both the base and the apex. Conversely, we found that TRUS overestimated prostate length, highlighting the interoperator variability inherent with TRUS; presumably this variability could be improved by using MRI/TRUS fusion. A previous dosimetric study compared TRUS-based and MRI-based preplanning and used MRI/TRUS fusion to confirm the reliability of MRI for preplanning (34).

A 79-year-old woman was referred to our department complaining of

A 79-year-old woman was referred to our department complaining of postprandial epigastric pain often radiating to the back, associated to early satiety, nausea and heartburn. She had a passed medical history of arterial hypertension and dyslipidemia. Aside from CHIR-99021 mild epigastric and left hipocondrial tenderness on abdominal examination, her physical examination was normal. Upper gastrointestinal endoscopy and

barium contrast study showed a bulky hiatal hernia (Fig. 1). No significative changes were seen on laboratorial or ultrasound investigation, although pancreas could not be properly visualized due to intense aerocolia. The research proceeded with an abdominal CT which enabled intrathoracic location of a great proportion of the stomach along with the body and part of the tail of the pancreas (Figure 2, Figure 3 and Figure 4). The patient was then submitted to surgical treatment. Reduction was easily effected, and the opening in the diaphragm was repaired. Recovery was uneventful and the patient became symptoms-free. Four types

of hernias have been described in the literature. Type I, also called sliding hernias, account for up to 95% of all hiatal hernias and occur when the GE junction migrates into the posterior mediastinum through the hiatus. Type II occurs when the fundus herniates alongside the esophagus through the hiatus, Sotrastaurin concentration remaining the GE junction normally positioned. Type III is a combination of types I and II hernias with a displaced GE junction as well as stomach protruding through the hiatus into the thorax Type IV paraesophageal hernias are very rare, representing 5–7% of all PEHH and result from a combination of increased intra-abdominal pressure and a large hiatal defect. The colon, particularly

the splenic flexure, is the most common organ that follows the stomach into the chest. Other common organs include loops of the small bowel and omentum. It is extraordinarily rare for the pancreas to herniate in paraesophageal hernias.2 Patients may be asymptomatic or present any of the typical or atypical symptoms seen Nutlin-3 datasheet in the other three hernia types.3 Symptomatic PEHH in operable patients should be repaired. The underlying surgical principles for successful repair include reduction of hernia contents, removal of the hernia sac, closure of the hiatal defect, and an antireflux procedure.4 The authors declare that no experiments were performed on humans or animals for this investigation. The authors declare that they have followed the protocols of their work center on the publication of patient data and that all the patients included in the study received sufficient information and gave their written informed consent to participate in the study. The authors have obtained the written informed consent of the patients or subjects mentioned in the article. The corresponding author is in possession of this document. The authors have no conflicts of interest to declare.

However, the transfer of the hp gas at the remaining small pressu

However, the transfer of the hp gas at the remaining small pressure differential towards the end of the extraction process was slow. Prolonged transfer times that allow for a maximized hp gas transfer were found to be detrimental to the overall spin polarization of the final hp gas sample. Using a 40% xenon in nitrogen mixture and an SEOP at pressure of 50 kPa, roughly 18 ml of hp 129Xe (with Extraction Scheme 1) with Papp≈14%Papp≈14% were obtained (Fig. 4). For the imaging experiments, a 25% xenon mixture was used at 40 kPa leading to Selleckchem Erlotinib a lower polarization of Papp = 10.9 ± 0.1% that was delivered for inhalation to an excised rat lung (see Section 6 for further experimental details).

Since this polarization led to excellent image quality shown in Fig. 5, the experiments were not repeated with the

Selleck GSK-3 inhibitor 40% mixture. A single, cryogenics free delivery of hp 129Xe was used and 4 ml of the hp gas mixture were inhaled by the excised rat lung for each MRI without signal averaging ( Fig. 5a, c, d, e, g and h) or for each of the scans when signal averaging was applied ( Fig 5b and f). Variable flip angle (VFA) FLASH MRI sequence [29] was applied to utilize the complete hyperpolarized spin state. Imai et al. had previously demonstrated in vivo   hp 129Xe MRI under continuous flow conditions without cryogen usage. This method allowed for, but also required, many inhalation cycles. However, Fig. 4 demonstrates that cryogenics free, slice selective MRI is feasible within a single scan (number of experiments; NEX = 1) 2-hydroxyphytanoyl-CoA lyase with the extraction schemes presented in this work, at least for ex vivo   work. Note that the high applied field strength of 9.4 T was not necessarily advantageous for pulmonary hp 129Xe MRI due to strong magnetic field inhomogeneities in the heterogeneous medium leading to fast transverse relaxation with T2⁎ = 1.77 ± 0.37 ms.

In vivo application of this method was not explored in this work, however Extraction Scheme 1 was applied to ex vivo lung functional studies, including post mortem airway sensitivity to methacholine challenge, published elsewhere [30]. Due to quadrupolar relaxation that causes fast depolarization, a rapid gas transfer is crucial for the hp 83Kr extraction if polarization losses are to be minimized. Since transfer rate of the hp gas was dependent on the extraction scheme (see discussion in the Hp 129Xe extraction section) one would expect clear differences in the observed hp 83Kr spin polarization between Extraction Scheme 1 and 2. As shown in Fig. 4c, the slower Extraction Scheme 1 lead to substantial polarization losses compared to baseline data at all SEOP pressures below 150 kPa (filled squares). There was a clear advantage of Extraction Scheme 2 (triangles) and approximately 80% of the baseline polarization was recovered with this method at SEOP pressures above 50 kPa.

The MICs of the tested peptides were determined by 2-fold serial

The MICs of the tested peptides were determined by 2-fold serial broth microdilution in Müeller–Hinton broth (Difco) in 96-well plates. Aliquots of 45 μL of Müeller–Hinton broth (Difco) were placed in the microplates containing 50 μL of the peptides solutions. The mixture was completed by inoculation of 5 μL of bacterial suspension (107 CFU/mL),

according NCCLS (Wayne, 2004), resulting in a final volume of 100 μL with 104 CFU/well. Following inoculation, the microtitre plates were incubated at 37 °C for 18 h before the results were recorded. After this time, the turbidity of the cultures was measured in an ELISA reader at CFTR modulator 595 nm to assess bacterial growth. The results were expressed as inhibition percentage

of optical density (OD) against a control; this control was obtained in each situation by measuring the OD of the microorganisms introduced into the plate in the absence of peptide. Also, the lowest concentration of peptide at which there is no visible growth after overnight incubation was observed. A 4% suspension selleck chemicals of mouse erythrocytes (ES) was prepared as described (Rangel et al., 1997). Different concentrations of the peptides were incubated with the ES at room temperature (∼22 °C) in an Elisa plate (96 wells). After 1 h it was centrifuged (1085× g/5 min), and the hemolytic activity of the supernatant was measured by the absorbance at 540 nm, considering as blank the absorbance of Krebs–Henseleit physiological solution (mM: NaCl 113; KH2PO4 1.2; KCl 4; MgSO4 1.2; CaCl2 2.5; NaHCO3 25; glucose 11.1), which was the vehicle for the peptides. Total hemolysis

was obtained with 1% Triton X-100 and the percentage of hemolysis was calculated relative to this value. The ability of the peptides to induce mast cells degranulation was investigated in vitro using the protocol of quantification of the granular enzyme β-hexosaminidase released in the supernatants of PT18 cells (a connective tissue-type mast cell model) and RBL-2H3 cells (a mucosal-type mast cell model), according to Ortega et al. (1991). For this, 4 × 106 PT18 cells or 1.2 × 105 Protirelin RBL-2H3 cells (200 μL) were incubated in the presence of the peptides for 30 min in Tyrode’s buffer at 37 °C/5% CO2. After this, the cells were centrifuged and the supernatants collected. The cells incubated only with the Tyrode’s buffer were lysed with 0.5% Triton X-100 (200 μL) (Sigma–Aldrich) solution to evaluate the total enzyme content. From each experimental sample to be assayed, four aliquots (10 μL) of the supernatant were taken to separate microwell plates. To these samples, 90 μL of the substrate solution containing 1.3 mg/mL of p-nitrophenyl-N-acetyl-β-d-glucosamine (Sigma) in 0.1 M citrate, pH 4.5, were added and the plates incubated for 12 h at 37°C.

In order to improve plant resistance to phytopathogenic fungi, he

In order to improve plant resistance to phytopathogenic fungi, hevein-like peptides have been expressed in tobacco [33] and [52], tomato [31] and Arabidopsis plants [51] and [52]. These peptides can therefore be included in the selective class of promiscuous peptides, where a peptide or a peptide

family can have multiple activities under different environmental PFT�� supplier conditions [16]. In the case of family promiscuity, the multiple functions are related to different exposed residues in the same scaffold, which in turn are stabilized by their disulfide bonds [16]. Due to the conservation of disulfide bonds, these classes are good targets for mining protein databases. This kind of approach has been applied to cyclotides [42] and defensins [65] and has revealed novel aspects about them. Identification of novel hevein-like Talazoparib supplier peptides may bring to light new possibilities for their use as well as knowledge about their functions. To this end, this work reports the identification of novel hevein-like

peptide precursors through computational methods. Sequences from plants and also from a phytopathogenic fungus were identified and their structures and possible functions were predicted. The results presented here may also suggest new prospects for hevein domain interactions that are applicable to chitin studies. The data set of hevein-like peptides was constructed by using an automatic search system. Briefly, the system here proposed runs the Blast Urocanase software [2], reads its output, gets the retrieved sequences and subsequently runs Blast once more with these retrieved sequences. This process

was repeated until no novel sequences were obtained, as described by Zhu [65] with minor modifications. Additionally, the system was set to filter fragments and sequences larger than 130 amino acid residues. The initial sequence used for searching was the Ac-AMP2′s precursor, identified from Amaranthus caudatus [9] (UniProt ID: P27275), since it has antimicrobial and antifungal activities. The search was performed in SwissProt database [56]. The final data set was manually curated, selecting only the sequences annotated as fungicidal. The software Pratt 2.1 [27] was used for pattern identification into the hevein-like data set, using the default parameters (number of consecutive wild cards, maximum number of flexible spacers and maximum number of consecutive wild cards set to five, two and two, respectively). The pattern with the highest fitness value was used for searching against NCBI’s non-redundant protein database (NR), through regular expressions and PERL scripts. The script was set to select sequences annotated as hypothetical, unnamed and/or unknown proteins, restricting the maximum size to 130 amino acid residues.